Publications
2025
Amann M, Warstat R, Rechten KK, Theuer P, Schustereder M, Clavey S, Breit B, Einsle O, Hügle M, Petter M, Günther S (2025) A Novel Inhibitor against the Bromodomain Protein 1 of the Malaria Pathogen Plasmodium Falciparum. ChemMedChem. 20, e202500024. 10.1002/cmdc.202500024.
Elçin-Guinot, S, Lagies, S, Avi-Guy, Y, Neugebauer, D, Huber, T B, Schell, C, Kammerer, B, Römer W (2025) Lectin-Based Substrate Detection in Fabry Disease Using the Gb3-Binding Lectins StxB and LecA. Int. J. Mol. Sci. 26, 2272. 10.3390/ijms26052272.
Hoeser F, Saura P, Harter C, Kaila, V, Friedrich T (2025) A Leigh Syndrome mutation perturbs long-range energy coupling in respiratory complex I. Chem. Sci. 16, 7374-7386. 10.1039/D4SC04036H.
Hua L, Akcesme S, Müller K, Heerklotz H (2025) A Roadmap of Responses to Asymmetry Stress in Lipid Membranes. J. Phys. Chem. B 129, 1260-1273. 10.1021/acs.jpcb.4c05868.
Krompers M, Jaki, M, Götz S, Lembeck JK, Laurine D, Holzer M, Heerklotz H (2025) Asymmetric phase transitions in lipid bilayers: coupling or bending? Faraday Discuss. 259, 107-128. 10.1039/d5fd00003c.
Pfäffle SP, Herz C, Brombacher E, Proietti M, Gigl M, Hofstetter CK, Mittermeier-Kleßinger VK, Claßen S, Tran HTT, Rajguru D, Dawid C, Kreutz C, Günther S, Lamy E (2024) A 14-Day Double-Blind, Randomized, Controlled Crossover Intervention Study with Anti-Bacterial Benzyl Isothiocyanate from Nasturtium (Tropaeolum majus) on Human Gut Microbiome and Host Defense. Nutrients 16, 373. 10.3390/nu16030373. Erratum in: Nutrients (2025) 17, 1367. 10.3390/nu17081367.
Rauch J, Kurscheidt K, Shen K, Andrei A, Daum N, Öztürk Y, Melin F, Layer G, Hellwig P, Daldal F, Koch HG (2025) The small membrane protein CcoS is involved in cofactor insertion into cbb3-type cytochrome oxidase. Biochim. Biophys. Acta 1866, 149524. 10.1016/j.bbabio.2024.149524.
Siddeeque R, Heger L, Kägi J, Friedrich T, Melin F, Hellwig P (2025) Interplay of acidic residues in the proton channel of E. coli cytochrome bd-I oxidase to promote oxygen reduction and NO release. Biochim. Biophys. Acta 1866, 149537. 10.1016/j.bbabio.2025.149537.
Becker F, Fuchs S, Refisch L, Drepper F, Bildl W, Schulte U, Liang S, Heinicke JI, Hansen SC, Kreutz C, Warscheid B, Fakler B. Mymrikov EV, Hunte C (2025) Conformational regulation and target-myristoyl switch of calcineurin B homologous protein 3. BioRxiv www.biorxiv.org/content/10.1101/2022.09.23.509142v2
Carabadjac I, Heerklotz H (2025) Time-resolved fluorescence of tryptophan in biophysical chemistry and pharmaceutical research – the pleasures and nightmares dealing with nature’s own fluorophore I. Quart. Rev. Biophys. (in press).
Haxhija J, Amann M, Günther S, Koslowski T (2025) Binding Free Energy Calculations for Bromodomain Ligands: A Binding Affinity Tool-Based Approach. ChemRxiv; 10.26434/chemrxiv-2025-17m5v.
Chen WW, Rodrigues TA, Wendscheck D, Pedrosa AG, Yang C, Francisco T, Möcklinghoff T, Zografakis A, Nunes-Silva B, Avraham RE, Silva AR, Ferreira MJ, Das H, Koster J, Neuwirth S, Bender J, Oeljeklaus S, Sondhi V, Gatsogiannis C, Schuldiner M, Zalckvar E, Hofmann K, Waterham HR, DeBerardinis RJ, Azevedo JE, Warscheid B (2025) PEX39 facilitates the peroxisomal import of PTS2-containing proteins. Nat. Cell. Biol. 27, 1256-1271. 10.1038/s41556-025-01711-z.
Feng Y, Qaseem A, Moumbock AFA, Pan S, Kirchner PA, Simoben CV, Malange YI, Babiaka SB, Gao M, Günther S (2025) StreptomeDB 4.0: a comprehensive database of streptomycetes natural products enriched with protein interactions and interactive spectral visualization. Nucleic Acids Res. 53, D724-D729. 10.1093/nar/gkae1030.
Grimmeisen M, Wang X, Weldle M, Sartory K, Benkhelifa S, Zhang Y, Dao T, Meyer J, Gorka O, Groß O, Jessen-Trefzer C (2025) Synthesis and Evaluation of Trehalose-Based Mertansine Warheads for Bacillus Calmette-Guérin Delivery of Anticancer Agents. Chembiochem. 2025, e2500390. 10.1002/cbic.202500390.
Harter C, Melin F, Hoeser F, Hellwig P, Wohlwend D, Friedrich T (2024) Quinone chemistry in respiratory complex I involves protonation of a conserved aspartic acid residue. FEBS Lett. 598, 2856-2865. 10.1002/1873-3468.15013.
Hoeser F, Saura P, Harter C, Kaila, V, Friedrich T (2025) A Leigh Syndrome mutation perturbs long-range energy coupling in respiratory complex I. Chem. Sci. 16, 7374-7386. 10.1039/D4SC04036H.
Rauch J, Kurscheidt K, Shen K, Andrei A, Daum N, Öztürk Y, Melin F, Layer G, Hellwig P, Daldal F, Koch HG (2025) The small membrane protein CcoS is involved in cofactor insertion into cbb3-type cytochrome oxidase. Biochim. Biophys. Acta 1866, 149524. 10.1016/j.bbabio.2024.149524.
2024
Carabadjac I, Steigenberger J, Geudens N, De Roo V, Muangkaew P, Madder A, Martins JC, Heerklotz H (2024) Time-resolved fluorescence of tryptophan characterizes membrane perturbation by cyclic lipopeptides. Biophys. J. 123, 2557-2573. 10.1016/j.bpj.2024.06.022.
Carabadjac I, Vormittag LC, Muszer T, Wuth J, Ulbrich MH, Heerklotz H (2024) Transfer of ANS-Like Drugs from Micellar Drug Delivery Systems to Albumin Is Highly Favorable and Protected from Competition with Surfactant by “Reserved” Binding Sites. Mol. Pharm. 21, 2198-2211. 10.1021/acs.molpharmaceut.3c00875.
Eickhorst C, Babic R, Rush-Kittle J, Lucya L, Imam FL, Sánchez-Martín P, Hollenstein DM, Michaelis J, Münch C, Meisinger C, Slade D, Gámez-Díaz L, Kraft C (2024) FIP200 Phosphorylation Regulates Late Steps in Mitophagy. J. Mol. Biol. 436, 168631. 10.1016/j.jmb.2024.168631.
Harter C, Melin F, Hoeser F, Hellwig P, Wohlwend D, Friedrich T (2024) Quinone chemistry in respiratory complex I involves protonation of a conserved aspartic acid residue. FEBS Lett. 598, 2856-2865. 10.1002/1873-3468.15013.
Imam FL, Meisinger C, Marada A (2024) Monitoring protein phosphorylation at the mitochondrial protein import machinery by PhosTag electrophoresis. Methods Enzymol. 707, 501-517. 10.1016/bs.mie.2024.07.063.
Marada A, Walter C, Suhm T, Shankar S, Nandy A, Brummer T, Dhaouadi I, Vögtle FN, Meisinger C (2024) DYRK1A signalling synchronizes the mitochondrial import pathways for metabolic rewiring. Nat. Commun. 15, 5265. 10.1038/s41467-024-49611-4.
Müller M, Bialas E, Sturm I, Sood U, Lal R, Bechthold A (2024) Genomic modifications for enhanced antibiotic production in rifamycin derivative-producing Amycolatopsis mediterranei S699 strains: focusing on rifQ and rifO genes. Front. Antibiot. 3, 1399139. 10.3389/frabi.2024.1399139.
Pflüger T, Gschell M, Zhang L, Shnitsar V, Zabadné AJ, Zierep P, Günther S, Einsle O, Andrade SLA (2024) How sensor Amt-like proteins integrate ammonium signals. Sci. Adv. 10, eadm9441. 10.1126/sciadv.adm9441.
Sood U, Müller M, Lan T, Garg G, Singhvi N, Hira P, Singh P, Nigam A, Verma M, Lata P, Kaur H, Kumar A, Rawat CD, Lal S, Aldrich C, Bechthold A, Lal R (2024) Amycolatopsis mediterranei: A Sixty-Year Journey from Strain Isolation to Unlocking Its Potential of Rifamycin Analogue Production by Combinatorial Biosynthesis. J. Nat. Prod. 87, 424-438. 10.1021/acs.jnatprod.3c00686.
Wohlwend D, Mérono L, Bucka S, Ritter K, Jessen HJ, Friedrich T (2024) Structures of 3-acetylpyridine adenine dinucleotide and ADP-ribose bound to the electron input module of respiratory complex I. Structure 32, 715-724.e3. 10.1016/j.str.2024.02.013.
Zmyslia M, Capper MJ, Grimmeisen M, Sartory K, Deuringer B, Abdelsalam M, Shen K, Jung M, Sippl W, Koch HG, Kaul L, Süss R, Köhnke J, Jessen-Trefzer C (2024) A nanoengineered tandem nitroreductase: designing a robust prodrug-activating nanoreactor. RCS Chem. Biol. 6, 21-35. 10.1039/d4cb00127c.
2023
Becker F, Fuchs S, Refisch L, Drepper F, Bildl W, Schulte U, Liang S, Heinicke JI, Hansen SC, Kreutz C, Warscheid B, Fakler B, Mymrikov EV, Hunte C (2023) Conformational regulation and target-myristoyl switch of calcineurin B homologous protein 3. Elife 12, e83868. 10.7554/eLife.83868.
Denkhaus L, Siffert F, Einsle O (2023) An unusual active site architecture in cytochrome c nitrite reductase NrfA-1 from Geobacter metallireducens. FEMS Microbiol. Lett. 370, fnad068. 10.1093/femsle/fnad068.
Ebensperger P, Zmyslia M, Lohner P, Braunreuther J, Deuringer B, Becherer A, Süss R, Fischer A, Jessen-Trefzer C (2023) A Dual-Metal-Catalyzed Sequential Cascade Reaction in an Engineered Protein Cage. Angew. Chem. Int. Ed. Engl. 62, e202218413. 10.1002/anie.202218413.
Haxhija J, Guischard F, Koslowski T (2023) A trick of the tail: computing the entropic contribution to the energetics of quinone-protein unbinding. Phys. Chem. Chem. Phys. 25, 27498-27505. 10.1039/d3cp03466f.
Hua L, Kaiser M, Carabadjac I, Meister A, Hause G, Heerklotz H (2023) Vesicle budding caused by lysolipid-induced asymmetry stress. Biophys. J. 122, 4011-4022. 10.1016/j.bpj.2023.08.023.
Ilcu L, Denkhaus L, Brausemann A, Zhang L, Einsle O (2023) Architecture of the Heme-translocating CcmABCD/E complex required for Cytochrome c maturation. Nat. Commun. 14, 5190.
Kägi J, Sloan W, Schimpf J, Nasiri HR, Lashley D, Friedrich T (2023) Exploring ND-011992, a quinazoline-type inhibitor targeting quinone reductases and quinol oxidases. Sci. Rep. 13, 12226. 10.1038/s41598-023-39430-w.
Makarchuk I, Gerasimova T, Kägi J, Wohlwend D, Melin F, Friedrich T, Hellwig P (2023) Mutating the environment of heme b595 of E. coli cytochrome bd-I oxidase shifts its redox potential by 200 mV without inactivating the enzyme. Bioelectrochemistry, 151, 108379. 10.1016/j.bioelechem.2023.108379.
Njenga R, Boele J, Öztürk Y, Koch HG (2023) Coping with stress: How bacteria fine-tune protein synthesis and protein transport. J. Biol. Chem. 299, 105163. 10.1016/j.jbc.2023.105163.
Öztürk Y, Andrei A, Blaby-Haas CE, Daum N, Daldal F, Koch HG (2023) Metabolic sensing of extracytoplasmic copper availability via translational control by a nascent exported protein. mBIO 14, e3040-22. 10.1128/mbio.03040-22.
Sarmah P, Shang W, Origi A, Licheva M, Kraft C, Ulbrich MH, Lichtenberg E, Wilde A, Koch HG (2023) mRNA targeting eliminates the need for the signal recognition particle during membrane protein insertion in bacteria. Cell Rep. 42, 112140. 10.1016/j.celrep.2023.112140.
Steigenberger J, Verleysen Y, Geudens N, Madder A, Martins JC, Heerklotz H (2023) Complex electrostatic effects on the selectivity of membrane-permeabilizing cyclic lipopeptides. Biophys. J. 122, 950-963. 10.1016/j.bpj.2022.07.033.
Strotmann L, Harter C, Gerasimova T, Ritter K, Jessen HJ, Wohlwend D, Friedrich T (2023) H2O2 selectively damages the binuclear iron-sulfur cluster N1b of respiratory complex I. Sci. Rep. 13, 7652. 10.1038/s41598-023-34821-5.
Tomisch J, Busse V, Rosato F, Makshakova ON, Salavei P, Kittel AS, Gillon E, Lataster L, Imberty A, Meléndez AV, Römer W (2023) A Shiga Toxin B-Subunit-Based Lectibody Boosts T Cell Cytotoxicity towards Gb3-Positive Cancer Cells. Cells 12, 1896. 10.3390/cells12141896.
Zmyslia M, Fröhlich K, Dao T, Schmidt A, Jessen-Trefzer C (2023) Deep Proteomic Investigation of Metabolic Adaptation in Mycobacteria under Different Growth Conditions. Proteomes 11, 39. 10.3390/proteomes11040039.
Ilcu L, Denkhaus L, Brausemann A, Zhang L, Einsle O (2023) Architecture of the Heme-translocating CcmABCD/E complex required for Cytochrome c maturation. Nat. Commun. 14, 5190.
Moumbock AFA, Tran HTT, Lamy E, Günther S (2023) BC-11 is a covalent TMPRSS2 fragment inhibitor that impedes SARS-CoV-2 host cell entry. Arch. Pharm. 356, e2200371. 10.1002/ardp.202200371.
Xu M, Antonova M, Salavei P, Illek K, Meléndez AV, Omidvar R, Thuenauer R, Makshakova O, Römer W (2023) Dimeric Lectin Chimeras as Novel Candidates for Gb3-Mediated Transcytotic Drug Delivery through Cellular Barriers. Pharmaceutics 15, 225. 10.3390/pharmaceutics15010225.
Yu C, Runge HFP, Mukhopadhyay A, Zolles G, Ulbrich MH (2023) γ-2 and GSG1L bind with comparable affinities to the tetrameric GluA1 core. Cell. Mol. Biol. Lett. 28, 54. 10.1186/s11658-023-00470-9.
2022
Czech L, Mais CN Sarmah P, Krazat H, Giammarinaro P, Freibert S, Musial J, Bernningshausen O, Steinchen W, Beckmann R, Koch HG, Bange G (2022) Shutdown of secretory pathway by the bacterial alarmones (p)ppGpp. Nat. Commun. 13, 1069. 10.1038/s41467-022-28675-0.
Fischer S, Bürgi J, Gabay-Maskit S, Maier R, Mastalski T, Yifrach E, Obarska-Kosinska A, Rudowitz M, Erdmann R, Platta HW, Wilmanns M, Schuldiner M, Zalckvar E, Oeljeklaus S, Drepper F, Warscheid B (2022) Phosphorylation of the receptor protein Pex5p modulates import of proteins into peroxisomes. Biol. Chem. 404, 135-155. 10.1515/hsz-2022-0168.
Kägi J, Makarchuk I, Wohlwend D, Melin F, Friedrich T, Hellwig P (2022) E. coli cytochrome bd-I requires Asp58 in the CydB subunit for catalytic activity. FEBS Lett. 596, 2418-2424. 10.1002/1873-3468.14482.
Kors S, Hacker C, Bolton C, Maier R, Reimann L, Kitchener EJA, Warscheid B, Costello JL, Schrader M (2022) Regulating peroxisome-ER contacts via the ACBD5-VAPB tether by FFAT motif phosphorylation and GSK3β. J. Cell. Biol. 221, e202003143. 10.1083/jcb.202003143.
Makarchuk I, Kägi J, Gerasimova T, Wohlwend D, Friedrich T, Melin F, Hellwig P (2022) pH-dependent kinetics of NO release from E. coli bd-I and bd-II oxidase reveals involvement of Asp/Glu58B. Biochim. Biophys. Acta, 1863, 148952. 10.1016/j.bbabio.2022.148952.
Müller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lü W, Du J, Einsle O (2022) Molecular interplay of an assembly machinery for nitrous oxide reductase. Nature 606, 626-632. 10.1038/s41586-022-05015-2.
Oung SW, Kremer N, ben Amara S, Zaidi A, Koslowski T (2022) Protonation and orientation: a computational approach to cocaine diffusion through a model membrane. Phys. Chem. Chem. Phys. 24, 14219. 10.1039/d2cp01140a.
Priesnitz C, Böttinger L, Zufall N, Gebert M, Guiard B, van der Laan M, Becker T (2022) Coupling to Pam16 differentially controls the dual role of Pam18 in protein import and respiratory chain formation. Cell Rep. 39, 110619. 10.1016/j.celrep.2022.110619.
Steigenberger J, Mergen C, De Roo V, Geudens N, Martins JC, Heerklotz H (2022) The effect of membrane thickness on the membrane permeabilizing activity of the cyclic lipopeptide tolaasin II. Front. Mol. Biosci. 9, 1064742. 10.3389/fmolb.2022.1064742.
Van den Bergh B, Schramke H, Michiels J, Kimkes T, Radzikowski J, Schimpf J, Vedelaar S, Burschel S, Dewachter L, Loncar N, Schmidt A, Meijer T, Fauvart M, Friedrich T, Michiels J, Heinemann M (2022) Mutations in respiratory complex I promote antibiotic persistence through alterations in intracellular acidity and protein synthesis. Nat. Commun. 13, 54. 10.1038/s41467-022-28141-x.
Walter C, Marada A, Meisinger C (2022) Monitoring checkpoints of metabolism and protein biogenesis in mitochondria by Phos-tag technology. J. Proteomics 252, 104430. 10.1016/j.jprot.2021.104430.
Fischer S, Bürgi J, Gabay-Maskit S, Maier R, Mastalski T, Yifrach E, Obarska-Kosinska A, Rudowitz M, Erdmann R, Platta HW, Wilmanns M, Schuldiner M, Zalckvar E, Oeljeklaus S, Drepper F, Warscheid B (2022) Phosphorylation of the receptor protein Pex5p modulates import of proteins into peroxisomes. Biol. Chem. 404, 135-155. 10.1515/hsz-2022-0168.
Gao M, Moumbock AFA, Qaseem A, Xu Q, Günther S (2022) CovPDB: a high-resolution coverage of the covalent protein-ligand interactome. Nucleic Acids Res. 50, D445-D450. 10.1093/nar/gkab868.
Hoeser F, Tausend H, Götz S, Wohlwend D, Einsle O, Günther S, Friedrich T (2022) Respiratory complex I with charge symmetry in the membrane arm pumps protons. Proc. Natl. Acad. Sci. USA 119, e2123090119. 10.1073/pnas.2123090119.
Hoeser F, Weiß M, Friedrich T (2022) The clinically relevant triple mutation in the mtND1 gene inactivates Escherichia coli complex I. FEBS Lett. 596, 1124-1132. 10.1002/1873-3468.14325.
Van den Bergh B, Schramke H, Michiels J, Kimkes T, Radzikowski J, Schimpf J, Vedelaar S, Burschel S, Dewachter L, Loncar N, Schmidt A, Meijer T, Fauvart M, Friedrich T, Michiels J, Heinemann M (2022) Mutations in respiratory complex I promote antibiotic persistence through alterations in intracellular acidity and protein synthesis. Nat. Commun. 13, 54. 10.1038/s41467-022-28141-x.
Zierep PF, Vita R, Blazeska N, Moumbock AFA, Greenbaum JA, Peters B, Günther S (2022) Towards the prediction of non-peptidic epitopes. PLoS Comput. Biol. 18, e1009151. 10.1371/journal.pcbi.1009151.
2021
Alali A, Zhang L, Li J, Zuo C, Wassouf D, Yan X, Schwarzer P, Günther S, Einsle O, Bechthold A (2021) Biosynthesis of the Tricyclic Aromatic Type II Polyketide Rishirilide: New Potential Third Ring Oxygenation after Three Cyclization Steps. Mol. Biotechnol. 63, 502-514. 10.1007/s12033-021-00314-x.
Andrei A, di Renzo AM, Öztürk Y, Meisner A, Daum N, Frank F, Rauch J, Daldal F, Andrade SLA, Koch HG (2021). The CopA2-type P1B –type ATPase CcoI serves as central hub for cbb3-Cox biogenesis. Front. Microbiol. 12, 712465. 10.3389/fmicb.2021.712465.
Brandel A, Aigal S, Lagies S, Schlimpert M, Meléndez AV, Xu M, Lehmann A, Hummel D, Fisch D, Madl J, Eierhoff T, Kammerer B, Römer W (2021) The Gb3-enriched CD59/flotillin plasma membrane domain regulates host cell invasion by Pseudomonas aeruginosa. Cell. Mol. Life Sci. 8, 3637-3656. 10.1007/s00018-021-03766-1.
Cechova K, Lan C, Macik M, Barthes NPF, Jung M, Ulbrich M (2021) MH Kappa but not delta or mu opioid receptors form homodimers at low membrane densities. Cell. Mol. Life Sci. 78, 7557-7568. 10.1007/s00018-021-03963-y.
Dannenmaier S, Desroche-Altamirano C, Schüler L, Zhang Y, Hummel J, Oeljeklaus S, Milanov M, Koch HG, Rospert S, Alberti S, Warscheid B (2021) Quantitative proteomics identifies the universally conserved ATPase Ola1p as a positive regulator of heat shock response in Saccharomyces cerevisiae. J. Biol. Chem. 297, 101050. 10.1016/j.jbc.2021.
Dannenmaier S, Oeljeklaus S, Warscheid B (2021) 2nSILAC for Quantitative Proteomics of Prototrophic Baker's Yeast. Methods Mol. Biol. 2228, 253-270. 10.1007/978-1-0716-1024-4_18.
Frensch M, Jäger C, Müller PF, Tadić A, Wilhelm I, Wehrum S, Diedrich B, Fischer B (2021) Bacterial lectin BambL acts as a B cell superantigen. Cell. Mol. Life Sci. 78, 8165–8186. 10.1007/s00018-021-04009-z.
Grauel A, Kägi J, Rasmussen T, Makarchuk I, Oppermann S, Moumbock AFA, Wohlwend D, Müller R, Melin F, Günther S, Hellwig P, Böttcher B, Friedrich T (2021) Structure of Escherichia coli cytochrome bd-II type oxidase with bound aurachin D. Nat. Commun. 12, 6498. 10.1038/s41467-021-26835-2.
Guischard F, Haxhija J, Kaiser J, Koslowski T (2021) Protein vibrations and their localization properties: a numerical scaling analysis. Biophys. Chem. 274, 106594. 10.1016/j.bpc.2021.106594.
Kelly B, Carrizo GE, Edwards-Hicks J, Sanin DE, Stanczak MA, Priesnitz C, Flachsmann LJ, Curtis JD, Mittler G, Musa Y, Becker T, Buescher JM, Pearce EL (2021) Sulfur sequestration promotes multicellularity during nutrient limitation. Nature 591, 471-476. 10.1038/s41586-021-03270-3.
Lan C, Stulz A, Barthes N, Lauw S, Salavei P, Jung M, Heerklotz H, Ulbrich MH (2021) Designed membrane protein heterodimers and control of their affinity by binding domain and membrane linker properties. Nanoscale 13, 20692-20702. 10.1039/d1nr06574b.
Landwehr V, Milanov M, Angebauer L, Jüngert G, Hiersemenzel A, Schmitt F, Jiang H, Öztürk Y, Dannenmeier S, Drepper F, Warscheid B, Koch HG (2021) The universally conserved ATPase YchF regulates the translation of leaderless mRNAs in response to stress conditions. Front. Mol. Biosci. 8, 643696. 10.3389/fmolb.2021.643696.
Lohner P, Zmyslia M, Thurn J., Pape J, Gerasimaite R, Keller-Findeisen J, Groeer S, Deuringer B, Süss R, Walther A, Hell S, Lukinavicius G, Hugel T, Jessen-Trefzer C (2021) Inside a Shell – Organometallic Catalysis Inside Encapsulin Nanoreactors. Angew. Chem. Int. Ed. Engl. 60, 23835-23841. 10.1002/ange.202110327.
Nuber F, Merono L, Oppermann S, Schimpf J, Wohlwend D, Friedrich T (2021) A quinol anion as catalytic intermediate coupling proton translocation with electron transfer in E. coli respiratory complex I. Front. Chem. 9, 672969. 10.3389/fchem.2021.672969.
Nuber F, Schimpf J, di Rago JP, Tribouillard-Tanvier D, Procaccio V, Martin-Negrier ML, Trimouille A, Biner O, von Ballmoos C, Friedrich T (2021) Biochemical consequences of two clinically relevant ND-gene mutations in Escherichia coli respiratory complex I. Sci. Rep. 11, 12641. 10.1038/s41598-021-91631-3.
Olerinyova A, Sonn-Segev A, Gault J, Eichmann C, Schimpf J, Kopf AH, Rudden LSP, Ashkinadze D, Bomba R, Frey L, Greenwald J, Degiacomi MT, Steinhilper R, Killian A, Friedrich T, Riek R, Struwe WB, Kukura P (2021) Mass Photometry of Membrane Proteins. Chem 7, 1-13. 10.1016/j.chempr.2020.11.011.
Omidvar R, Yareni A, Brandel A, Hasenclever L, Helmstädter M, Rohrbach A, Römer W, Madl J (2021) Quantification of nanoscale forces in lectin-mediated bacterial attachment and uptake into giant liposomes. Nanoscale 13, 4016-4028. 10.1039/d0nr07726g.
Oswald J, Njenga R, Natriashvili A, Sarmah P, Koch HG (2021) The dynamic Sec translocon. Front. Mol. Biosci. 8, 664241. 10.3389/fmolb.2021.664241.
Öztürk Y, Blaby-Haas CE, Daum N, Andrei A, Daldal F, Koch HG (2021) Maturation of Rhodobacter capsulatus Multicopper Oxidase CutO Depends on the CopA Copper Efflux Pathway and requires the cutF Product. Front. Microbiol. 12, 720644. 10.3389/fmicb.2021.720644.
Schimpf J, Oppermann S, Gerasimova T, Santos Seica AF, Hellwig P, Grishkovskaya I, Wohlwend D, Haselbach D, Friedrich T (2021) Structure of the peripheral arm of a minimalistic respiratory complex I. Structure 30, 80-94.e4. 10.1016/j.str.2021.09.005.
Siukstaite L, Rosato F, Mitrovic A, Müller PF, Kraus K, Notova S, Imberty A, Römer W (2021) The Two Sweet Sides of Janus Lectin Drive Crosslinking of Liposomes to Cancer Cells and Material Uptake. Toxins (Basel) 13, 792. 10.3390/toxins13110792.
Steigenberger J, Verleysen Y, Geudens N, Martins JC, Heerklotz H (2021) The optimal lipid chain length of a membrane-permeabilizing lipopeptide results from the balance of membrane partitioning and local damage. Front. Microbiol. 12, 669709. 10.3389/fmicb.2021.669709.
Tsypik O, Makitrynskyy R, Yan X, Koch HG, Paululat T, Bechthold A (2021) Regulatory Control of Rishirilide(s) Biosynthesis in Streptomyces bottropensis. Microorganisms 9, 374. 10.3390/microorganisms9020374.
Walter C, Marada A, Suhm T, Ernsberger R, Muders V, Kücükköse C, Sánchez-Martín P, Hu Z, Aich A, Loroch S, Solari FA, Poveda-Huertes D, Schwierzok A, Pommerening H, Matic S, Brix J, Sickmann A, Kraft C, Dengjel J, Dennerlein S, Brummer T, Vögtle FN, Meisinger C (2021) Global kinome profiling reveals DYRK1A as critical activator of the human mitochondrial import machinery. Nat. Commun. 12, 4284. 10.1038/s41467-021-24426-9.
Brandel A, Aigal S, Lagies S, Schlimpert M, Meléndez AV, Xu M, Lehmann A, Hummel D, Fisch D, Madl J, Eierhoff T, Kammerer B, Römer W (2021) The Gb3-enriched CD59/flotillin plasma membrane domain regulates host cell invasion by Pseudomonas aeruginosa. Cell. Mol. Life Sci. 8, 3637-3656. 10.1007/s00018-021-03766-1.
Brausemann A, Zhang L, Ilcu L, Einsle O (2021) Architecture of the membrane-bound cytochrome c heme lyase CcmF. Nat. Chem. Biol. 17, 800-805. 10.1038/s41589-021-00793-8.
Grauel A, Kägi J, Rasmussen T, Makarchuk I, Oppermann S, Moumbock AFA, Wohlwend D, Müller R, Melin F, Günther S, Hellwig P, Böttcher B, Friedrich T (2021) Structure of Escherichia coli cytochrome bd-II type oxidase with bound aurachin D. Nat. Commun. 12, 6498. 10.1038/s41467-021-26835-2.
Li J, Moumbock AFA, Qaseem A, Xu Q, Feng Y, Wang D, Günther S (2021) AroCageDB: A Web-Based Resource for Aromatic Cage Binding Sites and Their Intrinsic Ligands. J. Chem. Inf. Model. 61, 5327-5330. 10.1021/acs.jcim.1c00927.
Moumbock AFA, Li J, Tran HTT, Hinkelmann R, Lamy E, Jessen HJ, Günther S (2021) ePharmaLib: A Versatile Library of e-Pharmacophores to Address Small-Molecule (Poly-)Pharmacology. J. Chem. Inf. Model. 61, 3659-3666. 10.1021/acs.jcim.1c00135.
Nuber F, Merono L, Oppermann S, Schimpf J, Wohlwend D, Friedrich T (2021) A quinol anion as catalytic intermediate coupling proton translocation with electron transfer in E. coli respiratory complex I. Front. Chem. 9, 672969. 10.3389/fchem.2021.672969.
Poveda-Huertes D, Taskin AA, Dhaouadi I, Myketin L, Marada A, Habernig L, Büttner S, Vögtle FN (2021) Increased mitochondrial protein import and cardiolipin remodelling upon early mtUPR. PLoS Genet. 17, e1009664. 10.1371/journal.pgen.1009664.
Schimpf J, Oppermann S, Gerasimova T, Santos Seica AF, Hellwig P, Grishkovskaya I, Wohlwend D, Haselbach D, Friedrich T (2021) Structure of the peripheral arm of a minimalistic respiratory complex I. Structure 30, 80-94.e4. 10.1016/j.str.2021.09.005.
Walter C, Marada A, Suhm T, Ernsberger R, Muders V, Kücükköse C, Sánchez-Martín P, Hu Z, Aich A, Loroch S, Solari FA, Poveda-Huertes D, Schwierzok A, Pommerening H, Matic S, Brix J, Sickmann A, Kraft C, Dengjel J, Dennerlein S, Brummer T, Vögtle FN, Meisinger C (2021) Global kinome profiling reveals DYRK1A as critical activator of the human mitochondrial import machinery. Nat. Commun. 12, 4284. 10.1038/s41467-021-24426-9.
2020
Andrei A, Öztürk Y, Khalfaoui-Hassani B, Rauch J, Marckmann D, Trasnea PI, Daldal F, Koch HG (2020) Cu homeostasis in Bacteria: The Ins and Outs. Membranes 10, e242. 10.3390/membranes10090242.
Bernhardt M, Berman S, Zechel D, Bechthold A (2020) Role of Two Exceptional trans Adenylation Domains and MbtH-like Proteins in the Biosynthesis of the Nonribosomal Peptide WS9324A from Streptomyces calvus ATCC 13382. Chembiochem. 21, 2659-2666. 10.1002/cbic.202000142.
Darkow E, Rog-Zielinska EA, Madl J, Brandel A, Siukstaite L, Omidvar R, Kohl P, Ravens U, Römer W, Peyronnet R (2020) The Lectin LecA Sensitizes the Human Stretch-Activated Channel TREK-1 but Not Piezo1 and Binds Selectively to Cardiac Non-myocytes. Front. Physiol. 21, 457, 10.3389/fphys.2020.00457.
Doan KN, Grevel A, Mårtensson CU, Ellenrieder L, Thornton N, Wenz LS, Opaliński Ł, Guiard B, Pfanner N, Becker T (2020) The Mitochondrial Import Complex MIM Functions as Main Translocase for α-Helical Outer Membrane Proteins. Cell Rep. 31, 107567. 10.1016/j.celrep.2020.107567.
Liang S, Fuchs S, Mymrikov EV, Stulz A, Kaiser M, Heerklotz H, Hunte C (2020) Calcium affects CHP1 and CHP2 conformation and their interaction with sodium/proton exchanger 1. FASEB J. 34, 3253-3266. 10.1096/fj.201902093R.
Nikolaev A, Makarchuk I, Thesseling A, Hoeser J, Friedrich T, Melin F, Hellwig P (2020) Stabilization of the highly hydrophobic membrane protein cytochrome bd oxidase on metallic surfaces for direct electrochemical studies. Molecules 25, 3240. 10.3390/molecules25143240.
Priesnitz C, Pfanner N, Becker T (2020) Studying protein import into mitochondria. Methods Cell. Biol 155, 45-79. 10.1016/bs.mcb.2019.11.006.
Regenold M, Steigenberger J, Siniscalchi E, Dunne M, Casettari L, Heerklotz H, Allen C (2020) Determining critical parameters that in uence in vitro performance characteristics of a thermosensitive liposome formulation of vinorelbine, J. Control Release 328, 551-561. 10.1016/j.jconrel.2020.08.059.
Santos Seica AF, Schimpf J, Friedrich T, Hellwig P (2020) Visualizing the movement of the amphipathic helix in the respiratory complex I using a nitrile infrared probe and SEIRAS FEBS Lett, 594, 491-496. 10.1002/1873-3468.13620.
Schubert T, Sych T, Madl J, Xu M, Omidvar R, Patalag L J, Ries A, Kettelhoit K, Brandel A, Mely Y, Steinem C, Werz D B, Thuenauer R, Römer W (2020) Differential recognition of lipid domains by two Gb3-binding lectins. Sci. Rep. 10, 9752. 10.1038/s41598-020-66522-8.
Schummer A, Maier R, Gabay-Maskit S, Hansen T, Mühlhäuser WWD, Suppanz I, Fadel A, Schuldiner M, Girzalsky W, Oeljeklaus S, Zalckvar E, Erdmann R, Warscheid B (2020) Pex14p Phosphorylation Modulates Import of Citrate Synthase 2 Into Peroxisomes in Saccharomyces cerevisiae. Front. Cell. Dev. Biol. 8, 549451. 10.3389/fcell.2020.549451.
Schwarzer P, Tsypik O, Zuo C, Alali A, Wunsch-Palasis J, Heitzler T, Derochefort J, Bernhardt M, Yan X, Paululat T, Bechthold A (2020) Early Steps in the Biosynthetic Pathway of Rishirilide B. Molecules 25, 1955. 10.3390/molecules25081955.
Selamoglu N, Önder Ö, Öztürk Y, Khalfaoui-Hassani B, Blaby-Haas CB, Garcia B, Koch HG, Daldal F (2020) Comparative Differential Cuproproteomes of Rhodobacter capsulatus Reveal Novel Copper Homeostasis Related Proteins. Metallomics 12, 572-591. 10.1039/c9mt00314b.
Sonn-Segev A, Belacic K, Bodrug T, Young G, VanderLinden RT, Schulman BA, Schimpf J, Friedrich T, Dip PV, Schwartz TU, Bauer B, Peters J-M, Struwe WB, Benesch JLP, Brown NG, Haselbach D, Kukura P (2020) Quantifying the heterogeneity of macromolecular machines by mass photometry. Nat. Commun. 11, 1772. 10.1038/s41467-020-15642-w.
Steinberg R, Origi A, Natriashvili A, Sarmah P, Licheva M, Walker PM, Kraft C, High S, Luirink J, Shi WQ, Helmstädter M, Ulbrich MH, Koch HG (2020) Post-translational insertion of small membrane proteins by the bacterial signal recognition particle. Plos Biol. 18, e30000874. 10.1371/journal.pbio.3000874
Stulz A, Breitsamer M, Winter G, Heerklotz H (2020) Primary and secondary binding of exenatide to liposomes. Biophys. J. 118, 600-611. 10.1016/j.bpj.2019.12.028.
Thuenauer R, Landi A, Trefzer A, Altmann S, Wehrum S, Eierhoff T, Diedrich B, Dengjel J, Nyström A, Imberty A, Römer W (2020) The Pseudomonas aeruginosa Lectin LecB Causes Integrin Internalization and Inhibits Epithelial Wound Healing. mBio 11, e03260-19. 10.1128/mBio.03260-19.
Poveda-Huertes D, Matic S, Marada A, Habernig L, Licheva M, Myketin L, Gilsbach R, Tosal-Castano S, Papinski D, Mulica P, Kretz O, Kücükköse C, Taskin AA, Hein L, Kraft C, Büttner S, Meisinger C, Vögtle FN (2020) An Early mtUPR: Redistribution of the Nuclear Transcription Factor Rox1 to Mitochondria Protects against Intramitochondrial Proteotoxic Aggregates. Mol. Cell. 77, 180-188.e9. 10.1016/j.molcel.2019.09.026.
Schubert T, Sych T, Madl J, Xu M, Omidvar R, Patalag L J, Ries A, Kettelhoit K, Brandel A, Mely Y, Steinem C, Werz D B, Thuenauer R, Römer W (2020) Differential recognition of lipid domains by two Gb3-binding lectins. Sci. Rep. 10, 9752. 10.1038/s41598-020-66522-8.
Kaiser J, Castellano M, Gnandt D, Koslowski T (2020) Monte Carlo simulation and thermodynamic integration applied to protein charge transfer. J. Comp. Chem. 41, 1105-1115. 10.1002/jcc.26155.
Lill P, Hansen T, Wendscheck D, Klink BU, Jeziorek T, Vismpas D, Miehling J, Bender J, Schummer A, Drepper F, Girzalsky W, Warscheid B, Erdmann R, Gatsogiannis C (2020) Towards the molecular architecture of the peroxisomal receptor docking complex. Proc. Natl. Acad. Sci. USA 117, 33216-33224. 10.1073/pnas.2009502117.
Markones M, Fippel A, Kaiser M, Drechsler C, Hunte C, Heerklotz H (2020) Stairway to Asymmetry: Five Steps to Lipid-Asymmetric Proteoliposomes. Biophys. J. 3495, 34343-34347. 10.1016/j.bpj.2019.10.043.
Mühlbauer M, Saura P, Nuber F, Di Luca A, Friedrich T, Kaila V (2020) Water-Gated Proton Transfer Dynamics in Respiratory Complex I. J. Am. Chem. Soc. 142, 13718-13728. 10.1021/jacs.0c02789.
Oppermann S, Höfflin S, Friedrich T (2020) ErpA is important but not essential for the Fe/S cluster biogenesis of Escherichia coli NADH:ubiquinone oxidoreductase (complex I). Biochim. Biophys. Acta 1861, 148286. j.bbabio.2020.148286.
Theßeling A, Burschel S, Wohlwend D, Friedrich T (2020) The long Q-loop of Escherichia coli cytochrome bd oxidase is required for assembly and structural integrity. FEBS Lett. 594, 1577-1585. 10.1002/1873-3468.13749.
2019
Burschel S, Kreuzer Decovic D, Nuber F, Stiller M, Hofmann M, Zupok A, Siemiatkowska B, Gorka M, Leimkühler S, Friedrich T (2019) Iron-sulfur cluster carrier proteins involved in the assembly of Escherichia coli NADH:ubiquinone oxidoreductase (complex I). Mol. Microbiol. 111, 31-45. 10.1111/mmi.14137.
Breitsamer M, Stulz A, Heerklotz H, Winter G (2019) Do interactions between Protein and Phospholipids influence the release behavior from lipid-based exenatide depot systems? Eur. J. Biopharm. 142, 61-69. 10.1016/j.bpj.2019.12.028.
Kalel V, Li M, Gausmann S, Delhommel F, Schäfer A, Tippler B, Jung M, Maier R, Oeljeklaus S, Schliebs W, Warscheid B, Sattler M, Erdmann R (2019) Evolutionary divergent PEX3 is essential for the glycosomes biogenesis and survival of the trypanosomatid parasites; Biochim. Biophys. Acta 1866, 118520. 10.1016/j.bbamcr.2019.07.015.
Li M, Müller C, Fröhlich K, Gorka O, Zhang L, Groß O, Schilling O, Einsle O, Jessen-Trefzer C (2019) Detection and Characterization of a Mycobacterial L-Arabinofuranose ABC Transporter Identified with a Rapid Lipoproteomics Protocol. Cell. Chem. Biol. 26, 852-862.e6. 10.1016/j.chembiol.2019.03.002.
Marckmann D, Trasnea P-I, Schimpf J, Winterstein C, Andrei A, Schmollinger S, Blaby-Haas, CE, Friedrich T, Daldal F, Koch HG (2019) The cbb3-type cytochrome oxidase assembly factor CcoG is a widely distributed cupric reductase. Proc. Natl. Acad. Sci. USA, 116, 21166-21175. 10.1073/pnas.1913803116.
Martensson CU, Priesnitz C, Song J, Ellenrieder L, Doan KN, Boos F, Floerchinger A, Zufall N, Oeljeklaus S, Warscheid B, Becker T (2019) Mitochondrial protein translocation-associated degradation. Nature 569, 679-683. 10.1038/s41586-019-1227-y.
Origi A, Natriashvili A, Knüpffer L, Fehrenbach C, Denks K, Asti R, Koch HG (2019) Yet another role for the bacterial ribosome. Microb. Cell 6, 524-526. 10.15698/mic2019.11.698.
Utz M, Andrei A, Milanov M, Trasnea PI, Marckmann D, Daldal F, Koch HG (2019) The Cu chaperone CopZ is required for Cu homeostasis in Rhodobacter capsulatus and influences cytochrome cbb3 oxidase assembly. Mol. Microbiol. 111, 764-783. 10.1111/mmi.14190.
Wilhelm I, Levit-Zerdoun E, Jakob J, Villringer S, Frensch M, Übelhart R, Landi A, Müller P, Imberty A, Thuenauer R, Claudinon J, Jumaa H, Reth M, Eibel H, Hobeika E, Römer W (2019) Carbohydrate-dependent B cell activation by fucose-binding bacterial lectins. Sci. Signal. 12, 571. 10.1126/scisignal.aao7194.
Zhang L, Wüst A, Prasser B, Müller C, Einsle O (2019) Functional assembly of nitrous oxide reductase provides insights into copper site maturation. Proc. Natl. Acad. Sci. USA 116, 12822-12827. 10.1073/pnas.1903819116.
Ellenrieder L, Dieterle MP, Doan KN, Martensson CU, Floerchinger A, Campo ML, Pfanner N, Becker T (2019) Dual Role of Mitochondrial Porin in Metabolite Transport across the Outer Membrane and Protein Transfer to the Inner Membrane. Mol. Cell. 73, 1056-1057. 10.1016/j.molcel.2018.12.014.
Gnandt D, Koslowski T (2019) Long-range electron-electron interaction and charge transfer in protein complexes: a numerical approach. Phys. Chem. Chem. Phys. 21, 18595-18604. 10.1039/c9cp03141c.
Martensson CU, Priesnitz C, Song J, Ellenrieder L, Doan KN, Boos F, Floerchinger A, Zufall N, Oeljeklaus S, Warscheid B, Becker T (2019) Mitochondrial protein translocation-associated degradation. Nature 569, 679-683. 10.1038/s41586-019-1227-y.
Schulte M, Frick K, Gnandt E, Jurkovic S, Burschel S, Labatzke R, Aierstock K, Fiegen D, Wohlwend D, Gerhardt S, Einsle O, Friedrich T (2019) A mechanism to prevent production of reactive oxygen species by Escherichia coli respiratory complex I. Nat. Commun. 10, 2551. 10.1038/s41467-019-10429-0.
Theßeling A, Rasmussen T, Burschel S, Wohlwend D, Kägi J, Muller R, Böttcher B, Friedrich T (2019) Homologous bd oxidases share the same architecture but differ in mechanism. Nat. Commum. 10, 5138. 10.1038/s41467-019-13122-4.
2018
Aufschnaiter A, Kohler V, Walter C, Tosal-Castano S, Habernig L, Wolinski H, Keller W, Vögtle FN, Buettner S (2018) The Enzymatic Core of the Parkinson’s Disease-Associated Protein LRRK2 Impairs Mitochondrial Biogenesis in Aging Yeast. Front Mol Neurosc 11:205.
Dannenmaier S, Stiller S, Morgenstern M, Lübbert P, Oeljeklaus S, Wiedemann N, Warscheid B (2018) Complete native stable isotope labeling by amino acids of Saccharomyces cerevisiae for global proteomic analysis. Anal. Chem. 90, 10501-10509. 10.1021/acs.analchem.8b02557.
Gnandt D, Na S, Koslowski T (2018) Simulating biological charge transfer: continuum dielectric theory or molecular dynamics? Biophys. Chem. 241, 1-7. 10.1016/j.bpc.2018.07.001.
Hoeser J, Gnandt E, Friedrich T (2018) Low cost, microcontroller based heating device for multi-wavelength differential scanning fluorimetry. Sci Rep 8, 1457. 10.1038/s41598-018-19702-6.
Na S, Jurkovic S, Friedrich T, Koslowski T (2018) Charge transfer through a fragment of the respiratory complex I and its regulation: an atomistic simulation approach. Phys. Chem. Chem. Phys. 20, 20023-20032. 10.1039/c8cp02420k.
Na S, Steinbrecher T, Koslowski T (2018) Thermodynamic integration network approach to ion transport through protein channels: perspectives and limits. J. Comp. Chem. 39, 2539-2550. 10.1002/jcc.25615.
Opaliński Ł, Song J, Priesnitz C, Wenz LS, Oeljeklaus S, Warscheid B, Pfanner N, Becker T (2018) Recruitment of Cytosolic J-Proteins by TOM Receptors Promotes Mitochondrial Protein Biogenesis. Cell Rep. 25, 2026-2043. 10.1016/j.celrep.2018.10.083.
Pflüger T, Hernández CF, Lewe P, Frank F, Mertens H, Svergun D, Baumstark MW, Lunin VY, Jetten MSM, Andrade SLA (2018) Signaling Ammonium Across Membranes Through an Ammonium Sensor Histidine Kinase. Nat. Commun. 9, 164. 10.1038/s41467-017-02637-3.
Priesnitz C, Becker T (2018) Pathways to balance mitochondrial translation and protein import. Genes Dev. 32, 1285-1296. 10.1101/gad.316547.118.
Ribeiro JP, Villringer S, Goyard D, Coche-Guerente L, Höferlin M, Renaudet O, Römer W, Imberty A (2018) Tailor-made Janus lectin with dual avidity assembles glycoconjugate multilayers and crosslinks protocells. Chem. Sci. 9, 7634-7641. 10.1039/c8sc02730g.
Schwarzer P, Wunsch-Palasis J, Bechthold A, Paululat T (2018) Biosynthesis of rishirilid B. Antibiotics (Basel) 7, 20-28. 10.3390/antibiotics7010020
Steinberg R, Knüpffer L, Origi A, Asti R, Koch HG (2018) Co-translational protein targeting in bacteria. FEMS Microbiol. Lett. 365, 10.1093. 10.1093/femsle/fny095.
Trasnea PI, Andrei A, Markmann D, Utz M, Khalfaoui-Hassani B, Selamoglu N, Daldal F, Koch HG (2018) A copper relay system involving two periplasmic chaperones drives cbb3 type cytochrome c oxidase biogenesis in Rhodobacter capsulatus. ACS Chem. Biol. 13, 1388-1397. 10.1021/acschembio.8b00293.
Villringer S, Madl J, Sych T, Manner C, Imberty A, Römer W (2018) Lectin-mediated protocell crosslinking to mimic cell-cell junctions and adhesion. Sci. Rep. 8, 1932. 10.1038/s41598-018-20230-6.
Walter C, Gonczarowska-Jorge H, Sickmann A, Zahedi RP, Meisinger C, Schmidt O (2018) Advanced tools for the analysis of protein phosphorylation in yeast mitochondria. Anal. Biochem. 554, 23-27. 10.1016/j.ab.2018.05.022.
Bottinger L, Martensson CU, Song J, Zufall N, Wiedemann N, Becker T (2018) Respiratory chain supercomplexes associate with the cysteine desulfurase complex of the iron-sulfur cluster assembly machinery. Mol. Biol. Cell. 29, 776-785. 10.1091/mbc.E17-09-0555.
Drechsler C, Markones M, Choi JY, Frieling N, Fiedler S, Voelker DR, Schubert R, Heerklotz H (2018) Preparation of Asymmetric Liposomes Using a Phosphatidylserine Decarboxylase. Biophys. J. 115, 1509-1517. 10.1016/j.bpj.2018.08.036.
Gnandt D, Na S, Koslowski T (2018) Simulating biological charge transfer: continuum dielectric theory or molecular dynamics? Biophys. Chem. 241, 1-7. 10.1016/j.bpc.2018.07.001.
Kravic B, Harbauer AB, Romanello V, Simeone L, Vögtle FN, Kaiser T, Straubinger M, Huraskin D, Böttcher M, Cerqua C, Martin ED, Poveda-Huertes D, Buttgereit A, Rabalski AJ, Heuss D, Rudolf R, Friedrich O, Litchfield,D, Marber M, Salviati L, Mougiakakos D, Neuhuber W, Sandri M, Meisinger C, Hashemolhosseini S (2018) In mammalian skeletal muscle, phosphorylation of TOMM22 by protein kinase CSNK2/CK2 controls mitophagy. Autophagy 14, 311-335. 10.1080/15548627.2017.1403716.
Yifrach E, Fischer S, Oeljeklaus S, Schuldiner M, Zalckvar E, Warscheid B (2018) Defining the mammalian peroxisomal proteome. Subcell. Biochem. 89, 47-66. 10.1007/978-981-13-2233-4_2.
2017
Denks K, Sliwinski N, Erichsen V, Borodkina B, Origi A, Koch HG (2017) The signal recognition particle contacts uL23 and scans substrate translation inside the ribosomal tunnel. Nat. Microbiol. 2, 16265. 10.1038/nmicrobiol.2016.265.
Dörner K, Vranas M, Schimpf J, Straub IR, Hoeser J, Friedrich T (2017) Significance of [2Fe-2S] Cluster N1a for Electron Transfer and Assembly of Escherichia coli Respiratory Complex I. Biochemistry 56, 2770-2778. 10.1021/acs.biochem.6b01058.
Gnandt E, Schimpf J, Harter C, Hoeser J, Friedrich T (2017) Reduction of the off-pathway iron-sulphur cluster N1a of Escherichia coli respiratory complex I restrains NAD+ dissociation. Sci. Rep. 7, 8754. 10.1038/s41598-017-09345-4.
Gonsberg A, Jung S, Ulbrich S, Origi A, Ziska A, Baier M, Koch HG, Zimmermann R, Winklhofer KF, Tatzelt J (2017) The Sec61/SecY complex is inherently deficient in translocating intrinsically disordered proteins. J. Biol. Chem. 292, 21383-21396. 10.1074/jbc.M117.788067.
Morgenstern M, Stiller SB, Lübbert P, Peikert CD, Dannenmaier S, Drepper F, Weill U, Höß P, Feuerstein R, Gebert M, Bohnert M, van der Laan M, Schuldiner M, Schütze C, Oeljeklaus S, Pfanner N, Wiedemann N, Warscheid B (2017) Definition of a high-confidence mitochondrial proteome at quantitative scale. Cell Rep. 19, 2836-2852. 10.1016/j.cmet.2021.11.001.
Na S, Bauß A, Langenmaier M, Koslowski T (2017) Thermodynamic Integration Network Study of Electron Transfer: from Proteins to Aggregates. Phys. Chem. Chem. Phys. 19, 18938-18947. 10.1039/c7cp03030d.
Zheng S, Eierhoff T, Aigal S, Brandel A, Thuenauer R, de Bentzmann S, Imberty A, Römer W (2017) The Pseudomonas aeruginosa lectin LecA triggers host cell signalling by glycosphingolipid-dependent phosphorylation of the adaptor protein CrkII. Biochim. Biophys. Acta 1864, 1236-1245. 10.1016/j.bbamcr.2017.04.005.
Ilcu L, Röther W, Birke J, Brausemann A, Einsle O, Jendrossek D (2017) Structural and functional analysis of latex clearing protein (Lcp) provides insight into the enzymatic cleavage of rubber. Sci Rep 7, 6179. 10.1038/s41598-017-05268-2.
Martensson CU, Becker T (2017) Acylglycerol Kinase: Mitochondrial Protein Transport Meets Lipid Biosynthesis. Trends Cell. Biol. 27, 700-702. 10.1016/j.tcb.2017.08.006.
Martensson CU, Doan KN, Becker T (2017) Effects of lipids on mitochondrial functions. Biochim. Biophys. Acta 182, 102-113. 10.1016/j.bbalip.2016.06.015.
Käser S, Willemin M, Schnarwiler M, Schimanski B, Poveda-Huertes D, Oeljeklaus S, Warscheid B, Meisinger C, Schneider A (2017) Biogenesis of the mitochondrial DNA inheritance machinery in the mitochondrial outer membrane of Trypanosoma brucei. PLoS Pathog. 13, e1006808. 10.1371/journal.ppat.1006808.
Schummer A, Fischer S, Oeljeklaus S, Warscheid, B (2017) Study of peroxisomal protein phosphorylation by functional proteomics, Methods Mol. Biol. 1595, 267-289. 10.1007/978-1-4939-6937-1_26.
2020
Andrei A, Öztürk Y, Khalfaoui-Hassani B, Rauch J, Marckmann D, Trasnea PI, Daldal F, Koch HG (2020) Cu homeostasis in Bacteria: The Ins and Outs. Membranes 10, e242. 10.3390/membranes10090242.
Bernhardt M, Berman S, Zechel D, Bechthold A (2020) Role of Two Exceptional trans Adenylation Domains and MbtH-like Proteins in the Biosynthesis of the Nonribosomal Peptide WS9324A from Streptomyces calvus ATCC 13382. Chembiochem. 21, 2659-2666. 10.1002/cbic.202000142.
Darkow E, Rog-Zielinska EA, Madl J, Brandel A, Siukstaite L, Omidvar R, Kohl P, Ravens U, Römer W, Peyronnet R (2020) The Lectin LecA Sensitizes the Human Stretch-Activated Channel TREK-1 but Not Piezo1 and Binds Selectively to Cardiac Non-myocytes. Front. Physiol. 21, 457, 10.3389/fphys.2020.00457.
Doan KN, Grevel A, Mårtensson CU, Ellenrieder L, Thornton N, Wenz LS, Opaliński Ł, Guiard B, Pfanner N, Becker T (2020) The Mitochondrial Import Complex MIM Functions as Main Translocase for α-Helical Outer Membrane Proteins. Cell Rep. 31, 107567. 10.1016/j.celrep.2020.107567.
Liang S, Fuchs S, Mymrikov EV, Stulz A, Kaiser M, Heerklotz H, Hunte C (2020) Calcium affects CHP1 and CHP2 conformation and their interaction with sodium/proton exchanger 1. FASEB J. 34, 3253-3266. 10.1096/fj.201902093R.
Nikolaev A, Makarchuk I, Thesseling A, Hoeser J, Friedrich T, Melin F, Hellwig P (2020) Stabilization of the highly hydrophobic membrane protein cytochrome bd oxidase on metallic surfaces for direct electrochemical studies. Molecules 25, 3240. 10.3390/molecules25143240.
Priesnitz C, Pfanner N, Becker T (2020) Studying protein import into mitochondria. Methods Cell. Biol 155, 45-79. 10.1016/bs.mcb.2019.11.006.
Regenold M, Steigenberger J, Siniscalchi E, Dunne M, Casettari L, Heerklotz H, Allen C (2020) Determining critical parameters that in uence in vitro performance characteristics of a thermosensitive liposome formulation of vinorelbine, J. Control Release 328, 551-561. 10.1016/j.jconrel.2020.08.059.
Santos Seica AF, Schimpf J, Friedrich T, Hellwig P (2020) Visualizing the movement of the amphipathic helix in the respiratory complex I using a nitrile infrared probe and SEIRAS FEBS Lett, 594, 491-496. 10.1002/1873-3468.13620.
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Selamoglu N, Önder Ö, Öztürk Y, Khalfaoui-Hassani B, Blaby-Haas CB, Garcia B, Koch HG, Daldal F (2020) Comparative Differential Cuproproteomes of Rhodobacter capsulatus Reveal Novel Copper Homeostasis Related Proteins. Metallomics 12, 572-591. 10.1039/c9mt00314b.
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Steinberg R, Origi A, Natriashvili A, Sarmah P, Licheva M, Walker PM, Kraft C, High S, Luirink J, Shi WQ, Helmstädter M, Ulbrich MH, Koch HG (2020) Post-translational insertion of small membrane proteins by the bacterial signal recognition particle. Plos Biol. 18, e30000874. 10.1371/journal.pbio.3000874
Stulz A, Breitsamer M, Winter G, Heerklotz H (2020) Primary and secondary binding of exenatide to liposomes. Biophys. J. 118, 600-611. 10.1016/j.bpj.2019.12.028.
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Kaiser J, Castellano M, Gnandt D, Koslowski T (2020) Monte Carlo simulation and thermodynamic integration applied to protein charge transfer. J. Comp. Chem. 41, 1105-1115. 10.1002/jcc.26155.
Lill P, Hansen T, Wendscheck D, Klink BU, Jeziorek T, Vismpas D, Miehling J, Bender J, Schummer A, Drepper F, Girzalsky W, Warscheid B, Erdmann R, Gatsogiannis C (2020) Towards the molecular architecture of the peroxisomal receptor docking complex. Proc. Natl. Acad. Sci. USA 117, 33216-33224. 10.1073/pnas.2009502117.
Markones M, Fippel A, Kaiser M, Drechsler C, Hunte C, Heerklotz H (2020) Stairway to Asymmetry: Five Steps to Lipid-Asymmetric Proteoliposomes. Biophys. J. 3495, 34343-34347. 10.1016/j.bpj.2019.10.043.
Mühlbauer M, Saura P, Nuber F, Di Luca A, Friedrich T, Kaila V (2020) Water-Gated Proton Transfer Dynamics in Respiratory Complex I. J. Am. Chem. Soc. 142, 13718-13728. 10.1021/jacs.0c02789.
Oppermann S, Höfflin S, Friedrich T (2020) ErpA is important but not essential for the Fe/S cluster biogenesis of Escherichia coli NADH:ubiquinone oxidoreductase (complex I). Biochim. Biophys. Acta 1861, 148286. j.bbabio.2020.148286.
Theßeling A, Burschel S, Wohlwend D, Friedrich T (2020) The long Q-loop of Escherichia coli cytochrome bd oxidase is required for assembly and structural integrity. FEBS Lett. 594, 1577-1585. 10.1002/1873-3468.13749.
2019
Burschel S, Kreuzer Decovic D, Nuber F, Stiller M, Hofmann M, Zupok A, Siemiatkowska B, Gorka M, Leimkühler S, Friedrich T (2019) Iron-sulfur cluster carrier proteins involved in the assembly of Escherichia coli NADH:ubiquinone oxidoreductase (complex I). Mol. Microbiol. 111, 31-45. 10.1111/mmi.14137.
Breitsamer M, Stulz A, Heerklotz H, Winter G (2019) Do interactions between Protein and Phospholipids influence the release behavior from lipid-based exenatide depot systems? Eur. J. Biopharm. 142, 61-69. 10.1016/j.bpj.2019.12.028.
Kalel V, Li M, Gausmann S, Delhommel F, Schäfer A, Tippler B, Jung M, Maier R, Oeljeklaus S, Schliebs W, Warscheid B, Sattler M, Erdmann R (2019) Evolutionary divergent PEX3 is essential for the glycosomes biogenesis and survival of the trypanosomatid parasites; Biochim. Biophys. Acta 1866, 118520. 10.1016/j.bbamcr.2019.07.015.
Li M, Müller C, Fröhlich K, Gorka O, Zhang L, Groß O, Schilling O, Einsle O, Jessen-Trefzer C (2019) Detection and Characterization of a Mycobacterial L-Arabinofuranose ABC Transporter Identified with a Rapid Lipoproteomics Protocol. Cell. Chem. Biol. 26, 852-862.e6. 10.1016/j.chembiol.2019.03.002.
Marckmann D, Trasnea P-I, Schimpf J, Winterstein C, Andrei A, Schmollinger S, Blaby-Haas, CE, Friedrich T, Daldal F, Koch HG (2019) The cbb3-type cytochrome oxidase assembly factor CcoG is a widely distributed cupric reductase. Proc. Natl. Acad. Sci. USA, 116, 21166-21175. 10.1073/pnas.1913803116.
Martensson CU, Priesnitz C, Song J, Ellenrieder L, Doan KN, Boos F, Floerchinger A, Zufall N, Oeljeklaus S, Warscheid B, Becker T (2019) Mitochondrial protein translocation-associated degradation. Nature 569, 679-683. 10.1038/s41586-019-1227-y.
Origi A, Natriashvili A, Knüpffer L, Fehrenbach C, Denks K, Asti R, Koch HG (2019) Yet another role for the bacterial ribosome. Microb. Cell 6, 524-526. 10.15698/mic2019.11.698.
Utz M, Andrei A, Milanov M, Trasnea PI, Marckmann D, Daldal F, Koch HG (2019) The Cu chaperone CopZ is required for Cu homeostasis in Rhodobacter capsulatus and influences cytochrome cbb3 oxidase assembly. Mol. Microbiol. 111, 764-783. 10.1111/mmi.14190.
Wilhelm I, Levit-Zerdoun E, Jakob J, Villringer S, Frensch M, Übelhart R, Landi A, Müller P, Imberty A, Thuenauer R, Claudinon J, Jumaa H, Reth M, Eibel H, Hobeika E, Römer W (2019) Carbohydrate-dependent B cell activation by fucose-binding bacterial lectins. Sci. Signal. 12, 571. 10.1126/scisignal.aao7194.
Zhang L, Wüst A, Prasser B, Müller C, Einsle O (2019) Functional assembly of nitrous oxide reductase provides insights into copper site maturation. Proc. Natl. Acad. Sci. USA 116, 12822-12827. 10.1073/pnas.1903819116.
Ellenrieder L, Dieterle MP, Doan KN, Martensson CU, Floerchinger A, Campo ML, Pfanner N, Becker T (2019) Dual Role of Mitochondrial Porin in Metabolite Transport across the Outer Membrane and Protein Transfer to the Inner Membrane. Mol. Cell. 73, 1056-1057. 10.1016/j.molcel.2018.12.014.
Gnandt D, Koslowski T (2019) Long-range electron-electron interaction and charge transfer in protein complexes: a numerical approach. Phys. Chem. Chem. Phys. 21, 18595-18604. 10.1039/c9cp03141c.
Martensson CU, Priesnitz C, Song J, Ellenrieder L, Doan KN, Boos F, Floerchinger A, Zufall N, Oeljeklaus S, Warscheid B, Becker T (2019) Mitochondrial protein translocation-associated degradation. Nature 569, 679-683. 10.1038/s41586-019-1227-y.
Schulte M, Frick K, Gnandt E, Jurkovic S, Burschel S, Labatzke R, Aierstock K, Fiegen D, Wohlwend D, Gerhardt S, Einsle O, Friedrich T (2019) A mechanism to prevent production of reactive oxygen species by Escherichia coli respiratory complex I. Nat. Commun. 10, 2551. 10.1038/s41467-019-10429-0.
Theßeling A, Rasmussen T, Burschel S, Wohlwend D, Kägi J, Muller R, Böttcher B, Friedrich T (2019) Homologous bd oxidases share the same architecture but differ in mechanism. Nat. Commum. 10, 5138. 10.1038/s41467-019-13122-4.
2018
Aufschnaiter A, Kohler V, Walter C, Tosal-Castano S, Habernig L, Wolinski H, Keller W, Vögtle FN, Buettner S (2018) The Enzymatic Core of the Parkinson’s Disease-Associated Protein LRRK2 Impairs Mitochondrial Biogenesis in Aging Yeast. Front Mol Neurosc 11:205.
Dannenmaier S, Stiller S, Morgenstern M, Lübbert P, Oeljeklaus S, Wiedemann N, Warscheid B (2018) Complete native stable isotope labeling by amino acids of Saccharomyces cerevisiae for global proteomic analysis. Anal. Chem. 90, 10501-10509. 10.1021/acs.analchem.8b02557.
Gnandt D, Na S, Koslowski T (2018) Simulating biological charge transfer: continuum dielectric theory or molecular dynamics? Biophys. Chem. 241, 1-7. 10.1016/j.bpc.2018.07.001.
Hoeser J, Gnandt E, Friedrich T (2018) Low cost, microcontroller based heating device for multi-wavelength differential scanning fluorimetry. Sci Rep 8, 1457. 10.1038/s41598-018-19702-6.
Na S, Jurkovic S, Friedrich T, Koslowski T (2018) Charge transfer through a fragment of the respiratory complex I and its regulation: an atomistic simulation approach. Phys. Chem. Chem. Phys. 20, 20023-20032. 10.1039/c8cp02420k.
Na S, Steinbrecher T, Koslowski T (2018) Thermodynamic integration network approach to ion transport through protein channels: perspectives and limits. J. Comp. Chem. 39, 2539-2550. 10.1002/jcc.25615.
Opaliński Ł, Song J, Priesnitz C, Wenz LS, Oeljeklaus S, Warscheid B, Pfanner N, Becker T (2018) Recruitment of Cytosolic J-Proteins by TOM Receptors Promotes Mitochondrial Protein Biogenesis. Cell Rep. 25, 2026-2043. 10.1016/j.celrep.2018.10.083.
Pflüger T, Hernández CF, Lewe P, Frank F, Mertens H, Svergun D, Baumstark MW, Lunin VY, Jetten MSM, Andrade SLA (2018) Signaling Ammonium Across Membranes Through an Ammonium Sensor Histidine Kinase. Nat. Commun. 9, 164. 10.1038/s41467-017-02637-3.
Priesnitz C, Becker T (2018) Pathways to balance mitochondrial translation and protein import. Genes Dev. 32, 1285-1296. 10.1101/gad.316547.118.
Ribeiro JP, Villringer S, Goyard D, Coche-Guerente L, Höferlin M, Renaudet O, Römer W, Imberty A (2018) Tailor-made Janus lectin with dual avidity assembles glycoconjugate multilayers and crosslinks protocells. Chem. Sci. 9, 7634-7641. 10.1039/c8sc02730g.
Schwarzer P, Wunsch-Palasis J, Bechthold A, Paululat T (2018) Biosynthesis of rishirilid B. Antibiotics (Basel) 7, 20-28. 10.3390/antibiotics7010020
Steinberg R, Knüpffer L, Origi A, Asti R, Koch HG (2018) Co-translational protein targeting in bacteria. FEMS Microbiol. Lett. 365, 10.1093. 10.1093/femsle/fny095.
Trasnea PI, Andrei A, Markmann D, Utz M, Khalfaoui-Hassani B, Selamoglu N, Daldal F, Koch HG (2018) A copper relay system involving two periplasmic chaperones drives cbb3 type cytochrome c oxidase biogenesis in Rhodobacter capsulatus. ACS Chem. Biol. 13, 1388-1397. 10.1021/acschembio.8b00293.
Villringer S, Madl J, Sych T, Manner C, Imberty A, Römer W (2018) Lectin-mediated protocell crosslinking to mimic cell-cell junctions and adhesion. Sci. Rep. 8, 1932. 10.1038/s41598-018-20230-6.
Walter C, Gonczarowska-Jorge H, Sickmann A, Zahedi RP, Meisinger C, Schmidt O (2018) Advanced tools for the analysis of protein phosphorylation in yeast mitochondria. Anal. Biochem. 554, 23-27. 10.1016/j.ab.2018.05.022.
Bottinger L, Martensson CU, Song J, Zufall N, Wiedemann N, Becker T (2018) Respiratory chain supercomplexes associate with the cysteine desulfurase complex of the iron-sulfur cluster assembly machinery. Mol. Biol. Cell. 29, 776-785. 10.1091/mbc.E17-09-0555.
Drechsler C, Markones M, Choi JY, Frieling N, Fiedler S, Voelker DR, Schubert R, Heerklotz H (2018) Preparation of Asymmetric Liposomes Using a Phosphatidylserine Decarboxylase. Biophys. J. 115, 1509-1517. 10.1016/j.bpj.2018.08.036.
Gnandt D, Na S, Koslowski T (2018) Simulating biological charge transfer: continuum dielectric theory or molecular dynamics? Biophys. Chem. 241, 1-7. 10.1016/j.bpc.2018.07.001.
Kravic B, Harbauer AB, Romanello V, Simeone L, Vögtle FN, Kaiser T, Straubinger M, Huraskin D, Böttcher M, Cerqua C, Martin ED, Poveda-Huertes D, Buttgereit A, Rabalski AJ, Heuss D, Rudolf R, Friedrich O, Litchfield,D, Marber M, Salviati L, Mougiakakos D, Neuhuber W, Sandri M, Meisinger C, Hashemolhosseini S (2018) In mammalian skeletal muscle, phosphorylation of TOMM22 by protein kinase CSNK2/CK2 controls mitophagy. Autophagy 14, 311-335. 10.1080/15548627.2017.1403716.
Yifrach E, Fischer S, Oeljeklaus S, Schuldiner M, Zalckvar E, Warscheid B (2018) Defining the mammalian peroxisomal proteome. Subcell. Biochem. 89, 47-66. 10.1007/978-981-13-2233-4_2.
2017
Denks K, Sliwinski N, Erichsen V, Borodkina B, Origi A, Koch HG (2017) The signal recognition particle contacts uL23 and scans substrate translation inside the ribosomal tunnel. Nat. Microbiol. 2, 16265. 10.1038/nmicrobiol.2016.265.
Dörner K, Vranas M, Schimpf J, Straub IR, Hoeser J, Friedrich T (2017) Significance of [2Fe-2S] Cluster N1a for Electron Transfer and Assembly of Escherichia coli Respiratory Complex I. Biochemistry 56, 2770-2778. 10.1021/acs.biochem.6b01058.
Gnandt E, Schimpf J, Harter C, Hoeser J, Friedrich T (2017) Reduction of the off-pathway iron-sulphur cluster N1a of Escherichia coli respiratory complex I restrains NAD+ dissociation. Sci. Rep. 7, 8754. 10.1038/s41598-017-09345-4.
Gonsberg A, Jung S, Ulbrich S, Origi A, Ziska A, Baier M, Koch HG, Zimmermann R, Winklhofer KF, Tatzelt J (2017) The Sec61/SecY complex is inherently deficient in translocating intrinsically disordered proteins. J. Biol. Chem. 292, 21383-21396. 10.1074/jbc.M117.788067.
Morgenstern M, Stiller SB, Lübbert P, Peikert CD, Dannenmaier S, Drepper F, Weill U, Höß P, Feuerstein R, Gebert M, Bohnert M, van der Laan M, Schuldiner M, Schütze C, Oeljeklaus S, Pfanner N, Wiedemann N, Warscheid B (2017) Definition of a high-confidence mitochondrial proteome at quantitative scale. Cell Rep. 19, 2836-2852. 10.1016/j.cmet.2021.11.001.
Na S, Bauß A, Langenmaier M, Koslowski T (2017) Thermodynamic Integration Network Study of Electron Transfer: from Proteins to Aggregates. Phys. Chem. Chem. Phys. 19, 18938-18947. 10.1039/c7cp03030d.
Zheng S, Eierhoff T, Aigal S, Brandel A, Thuenauer R, de Bentzmann S, Imberty A, Römer W (2017) The Pseudomonas aeruginosa lectin LecA triggers host cell signalling by glycosphingolipid-dependent phosphorylation of the adaptor protein CrkII. Biochim. Biophys. Acta 1864, 1236-1245. 10.1016/j.bbamcr.2017.04.005.
Ilcu L, Röther W, Birke J, Brausemann A, Einsle O, Jendrossek D (2017) Structural and functional analysis of latex clearing protein (Lcp) provides insight into the enzymatic cleavage of rubber. Sci Rep 7, 6179. 10.1038/s41598-017-05268-2.
Martensson CU, Becker T (2017) Acylglycerol Kinase: Mitochondrial Protein Transport Meets Lipid Biosynthesis. Trends Cell. Biol. 27, 700-702. 10.1016/j.tcb.2017.08.006.
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Käser S, Willemin M, Schnarwiler M, Schimanski B, Poveda-Huertes D, Oeljeklaus S, Warscheid B, Meisinger C, Schneider A (2017) Biogenesis of the mitochondrial DNA inheritance machinery in the mitochondrial outer membrane of Trypanosoma brucei. PLoS Pathog. 13, e1006808. 10.1371/journal.ppat.1006808.
Schummer A, Fischer S, Oeljeklaus S, Warscheid, B (2017) Study of peroxisomal protein phosphorylation by functional proteomics, Methods Mol. Biol. 1595, 267-289. 10.1007/978-1-4939-6937-1_26.

